reactions and gene expression [7,8]. Despite such fluctuations in
the cellular milieu, the S. elongatus clock oscillates with high precision
and minimal damping for weeks in constant conditions [8,9].
Somehow, the clock is sufficiently robust to avoid a loss of synchrony
and the resulting spiral into a steady state.
Circadian oscillators evolved long ago, but our understanding of
the molecular mechanisms underlying circadian clocks remains
murky. These mechanisms have been investigated primarily in
cyanobacteria, fungi, flies, plants, and mammals. The prevailing
models for the internal timepieces of all but the first of those
organisms involve a negative transcriptional feedback loop in
which so-called clock genes encode proteins that repress their
own transcription. These negative feedback loops typically are
intertwined with other feedback loops and are overlaid with
post-translational regulation affecting protein stability, activity,
and localization [1]. Disentangling the mechanisms and rigorously
testing models of these oscillators have been hampered by the
complexity of both the oscillators themselves and the cellular environment
in which they are embedded.
An opportunity to break through such complexity recently
emerged from investigations of the circadian clock of S. elongatus,
whose core oscillator consists of just three proteins: KaiA, KaiB,
and KaiC. Although the oscillator originally was thought to be a
transcriptional feedback oscillator analogous to those found in
higher organisms [10], Kondo and colleagues showed in 2005 that
the clock of S. elongatus requires neither transcription nor translation
– oscillations in KaiC phosphorylation state persist in the
absence of transcriptional feedback and protein synthesis [4].
Remarkably, the Kai proteins themselves constitute a circadian
clock: temperature-compensated circadian oscillations in KaiC
phosphorylation can be reconstituted in vitro by combining the
three Kai proteins and adenosine triphosphate (ATP) [11]. This
three-protein, test-tube oscillator displays all three cardinal properties
of a circadian clock: free-run, temperature compensation,
and entrainment [11–13]. Oscillations of KaiC phosphorylation
free-run for at least 10 days in vitro [14], and the period of oscillation
is temperature-compensated [11,13]. The phase of the
in vitro clock is phase-shifted by, and entrainable to, temperature
shifts [12,13], although it is not entrainable by light, presumably
because cellular components required for this property are absent
2. Biochemistry of the Kai oscillator
The ability to reconstitute the oscillator in vitro and to mix and
match its four components (KaiA, KaiB, KaiC, and ATP) in arbitrary
combinations has permitted detailed, quantitative biochemical
characterization of the Kai proteins. Structures of all three proteins
(or their homologs in related organisms) have been solved by
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